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Publications

  • Hart AB*, Engelhardt BE*, Wardel MC, Sokoloff G, Stephens M, de Wit H, Palmer AA. "Genome-wide association study of d-amphetamine response in healthy human volunteers identifies putative associations, including cadherin 13 (CDH13)." (submitted)

  • Engelhardt BE, Jordan MI, Srouji JR, Brenner SE (2011) "Genome-scale phylogenetic function annotation of large and diverse protein families." Genome Research 12:1969-1980. [PDF] [software]

  • Engelhardt BE, Stephens M (2010) "Analysis of population structure: a unifying framework and novel methods based on sparse factor analysis." PLoS Genetics 6(9):e1001117. [PDF] [software]

  • Pickrell JK, Marioni JC, Pai AA, Degner JF, Engelhardt BE, Nkadori E, Veyrieras JB, Stephens M, Gilad Y, Pritchard JK (2010) "Understanding mechanisms underlying human gene expression variation with RNA sequencing." Nature 464:768-772. [link] [Nature Reviews Genetics article summary]

  • Engelhardt BE (2007) "Predicting protein molecular function." PhD Thesis, EECS Department, University of California, Berkeley. [pdf]

  • Engelhardt BE, Jordan MI, Brenner SE (2006) "A graphical model for predicting protein molecular function." Proceedings of the International Conference on Machine Learning (ICML). [pdf]

  • Engelhardt BE, Jordan MI, Muratore KE, Brenner SE (2005) "Protein molecular function prediction by Bayesian phylogenomics." PLoS Computational Biology 40:646-649. [pdf]

  • Amir E, Engelhardt BE (2003) "Factored planning." Proceedings of the International Joint Conference on Artificial Intelligence (IJCAI). [pdf]

    • (* denotes joint first author)