Gordon Kindlmann

Associate Professor,
Computer Science
University of Chicago

glk@uchicago.edu
CV
Google Scholar
Pubmed
DBLP

Office: Ryerson 161B

Mailing address:
Gordon Kindlmann
UChicago Computer Science
1100 East 58th St
Chicago, IL 60637

The following list is complete as of November 2017, and may be more complete than those generated by Google Scholar, Pubmed, or DBLP. Full papers are either peer-reviewed journal articles, or peer-reviewed papers in conferences, or both (as with VIS). All [bib] bibtex entries have been created by hand to be as accurate and consistent as possible. For many conference papers [slides] of the presentation are available. See note at page bottom about availability of PDFs of papers.

Full peer-reviewed papers Abstracts, posters, workshop or short papers Invited papers Book Chapters Graduate Theses

Full peer-reviewed papers

EV
2016
Glyphs for Asymmetric Second-Order 2D Tensors. N Seltzer and G Kindlmann. Computer Graphics Forum (Proceedings of the Eurographics/IEEE-VGTC Conference on Visualization "EuroVis"), 35(3):141–150, June 2016. (Honorable Mention for Best Paper).
[doi]   [pdf]   [bib]   [slides]
VIS
2015
Diderot: a Domain-Specific Language for Portable Parallel Scientific Visualization and Image Analysis. G Kindlmann, C Chiw, N Seltzer, L Samuels, and J Reppy. IEEE Transactions on Visualization and Computer Graphics (Proceedings VIS 2015), 22(1):867–876, January 2016.
[doi]   [pdf]   [bib]   [slides]   [video]
VIS
2014
An Algebraic Process for Visualization Design. G Kindlmann and C Scheidegger. IEEE Transactions on Visualization and Computer Graphics (Proceedings VIS 2014), 20(12):2181–2190, November 2014. (Honorable Mention for Best Paper).
[doi]   [pdf]   [bib]   [video]   [more info]
PNAS
2014
Helicity conservation by flow across scales in reconnecting vortex links and knots. MW Scheeler, D Kleckner, D Proment, GL Kindlmann, and WTM Irvine. Proceedings of the National Academy of Sciences, 111(43):15350–15355, October 2014.
[doi]   [bib]
MIA
2014
The effects of noise over the complete space of diffusion tensor shape. JK Gahm, G Kindlmann, and DB Ennis. Medical Image Analysis, 18(1):197–210, January 2014.
[doi]   [bib]
MP
2013
Pulmonary lobe segmentation based on ridge surface sampling and shape model fitting. JC Ross, GL Kindlmann, Y Okajima, H Hatabu, AA Díaz, EK Silverman, GR Washko, J Dy, and R San José Estépar. Medical Physics, 40(12):121903, December 2013.
[doi]   [bib]
VIS
2013
Open-Box Spectral Clustering: Applications to Medical Image Analysis. T Schultz and G Kindlmann. IEEE Transactions on Visualization and Computer Graphics (Proceedings of VIS 2013), 19(12):2100–2108, December 2013.
[doi]   [pdf]   [bib]   [video]   [more info]
AJRCCM
2013
Computed Tomographic Measures of Pulmonary Vascular Morphology in Smokers and Their Clinical Implications. R San José Estépar, GL Kinney, JL Black-Shinn, RP Bowler, GL Kindlmann, JC Ross, R Kikinis, MK Han, CE Come, AA Díaz, MH Cho, CP Hersh, JD Schroeder, JJ Reilly, DA Lynch, JD Crapo, JM Wells, MT Dransfield, JE Hokanson, GR Washko, and COPDGene Study. American Journal of Respiratory and Critical Care Medicine, 188(2):231—239, July 2013.
[doi]   [pdf]   [bib]
MICCAI
2012
Linear Invariant Tensor Interpolation Applied to Cardiac Diffusion Tensor MRI. JK Gahm, N Wisniewski, G Kindlmann, GL Kung, WS Klug, A Garfinkel, and DB Ennis. In Proceedings of the International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2012, Part II, volume 7511 of Lecture Notes in Computer Science, pages 494–501. Springer, October 2012.
[doi]   [pdf]   [bib]
PLDI
2012
Diderot: A Parallel DSL for Image Analysis and Visualization. C Chiw, G Kindlmann, J Reppy, L Samuels, and N Seltzer. In Proceedings of the 33rd ACM SIGPLAN Conference on Programming Language Design and Implementation (PLDI), pages 111–120, June 2012. (alphabetical author order).
[doi]   [pdf]   [bib]   [slides]
NI
2011
DTI measures in crossing-fibre areas: increased diffusion anisotropy reveals early white matter alteration in MCI and mild Alzheimer's disease. G Douaud, S Jbabdi, TE Behrens, RA Menke, A Gass, AU Monsch, A Rao, B Whitcher, G Kindlmann, PM Matthews, and S Smith. NeuroImage, 55(3):880–890, April 2011.
[doi]   [bib]
NS
2011
Interactive Diffusion Tensor Tractography Visualization for Neurosurgical Planning. AJ Golby, G Kindlmann, I Norton, A Yarmarkovich, S Pieper, and R Kikinis. Neurosurgery, 68(2):496–505, February 2011.
[doi]   [bib]   [more info]
VIS
2010
Superquadric Glyphs for Symmetric Second-Order Tensors. T Schultz and GL Kindlmann. IEEE Transactions on Visualization and Computer Graphics (Proceedings of VisWeek 2010), 16(6):1595–1604, November–December 2010.
[doi]   [pdf]   [bib]   [slides]   [code]
SPIE
2010
Optimizing synchrotron microCT for high-throughput phenotyping of zebrafish. PJ La Rivière, D Clark, A Rojek, P Vargas, X Xiao, F DeCarlo, G Kindlmann, and K Cheng. In Proceedings of the SPIE (Developments in X-Ray Tomography VII), volume 7804, page 78040M, September 2010.
[doi]   [bib]
MICCAI
2010b
Automatic Lung Lobe Segmentation Using Particles, Thin Plate Splines, and Maximum a Posteriori Estimation. JC Ross, R San José Estépar, G Kindlmann, A Díaz, C-F Westin, EK Silverman, and GR Washko. In Proceedings of the International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2010, Part III, volume 6363 of Lecture Notes in Computer Science, pages 163–171. Springer, September 2010.
[doi]   [pdf]   [bib]
MICCAI
2010
Multi-Diffusion-Tensor Fitting via Spherical Deconvolution: A Unifying Framework. T Schultz, C-F Westin, and G Kindlmann. In Proceedings of the International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2010, Part I, volume 6361 of Lecture Notes in Computer Science, pages 674–681. Springer, September 2010.
[doi]   [pdf]   [bib]
EuroVis
2010
A Maximum Enhancing Higher-Order Tensor Glyph. T Schultz and G Kindlmann. Computer Graphics Forum (Proceedings of the Eurographics/IEEE-VGTC Symposium on Visualization ("EuroVis") 2010), 29(3):1143–1152, June 2010.
[doi]   [pdf]   [bib]
IJCARS
2010
Direct visualization of fiber information by coherence. M Hlawitschka, C Garth, X Tricoche, G Kindlmann, G Scheuermann, KI Joy, and B Hamann. International Journal of Computer Assisted Radiology and Surgery, 5(2):125–131, March 2010.
[doi]   [pdf]   [bib]
NI
2010
Local White Matter Geometry from Diffusion Tensor Gradients. P Savadjiev, GL Kindlmann, S Bouix, ME Shenton, and C-F Westin. NeuroImage, 49(4):3175–86, February 2010.
[doi]   [bib]
VIS
2009
Sampling and Visualizing Creases with Scale-Space Particles. GL Kindlmann, R San José Estépar, SM Smith, and C-F Westin. IEEE Transactions on Visualization and Computer Graphics (Proceedings IEEE VisWeek), 15(6):1415–1424, November–December 2009.
[doi]   [pdf]   [bib]   [slides]   [code]
MICCAI
2009
Local White Matter Geometry Indices from Diffusion Tensor Gradients. P Savadjiev, G Kindlmann, S Bouix, ME Shenton, and C-F Westin. In Proceedings of the International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2009, Part I, volume 5761 of Lecture Notes in Computer Science, pages 345–352. Springer, September 2009.
[doi]   [pdf]   [bib]
NI
2009
Resolving crossings in the corticospinal tract by two-tensor streamline tractography: Method and clinical assessment using fMRI. AA Qazi, A Radmanesh, L O'Donnell, G Kindlmann, S Peled, S Whalen, C-F Westin, and AJ Golby. NeuroImage, 47(Supplement 2):T98–T106, August 2009.
[doi]   [bib]   [more info]
SR
2009
Increased Diffusivity in Superior Temporal Gyrus in Patients with Schizophrenia: A Diffusion Tensor Imaging Study. KU Lee, T Yoshida, M Kubicki, S Bouix, C-F Westin, G Kindlmann, M Niznikiewicz, A Cohen, RW McCarley, and ME Shenton. Schizophrenia Research, 1-3(108):33–40, March 2009.
[doi]   [bib]
VIS
2008
Invariant Crease Lines for Topological and Structural Analysis of Tensor Fields. X Tricoche, G Kindlmann, and C-F Westin. IEEE Transactions on Visualization and Computer Graphics (Proceedings of VisWeek 2008), 14(6):1627–1634, November–December 2008.
[doi]   [pdf]   [bib]
MMBIA
2008
Two-tensor streamline tractography through white matter intra-voxel fiber crossings: Assessed by fMRI. AA Qazi, G Kindlmann, L O'Donnell, S Peled, A Radmanesh, S Whalen, A Golby, and C-F Westin. In Proceedings of IEEE Computer Vision and Pattern Recognition Workshops: Mathematical Methods in Biomedical Image Analysis (MMBIA), pages 1–8, June 2008.
[doi]   [pdf]   [bib]
AR
2008
Optimization of Volumetric Computed Tomography for Skeletal Analysis of Model Genetic Organisms. SX Vasquez, MS Hansen, AN Bahadur, MF Hockin, GL Kindlmann, L Nevell, IQ Wu, DJ Grunwald, DM Weinstein, GM Jones, CR Johnson, JL Vandeberg, MR Capecchi, and C Keller. The Anatomical Record, 291(5):475–487, May 2008.
[doi]   [pdf]   [bib]
TMI
2007
Diffusion Tensor Analysis with Invariant Gradients and Rotation Tangents. G Kindlmann, DB Ennis, RT Whitaker, and C-F Westin. IEEE Transactions on Medical Imaging, 26(11):1483–1499, November 2007.
[doi]   [pdf]   [bib]
MIA
2007
Delineating white matter structure in diffusion tensor MRI with anisotropy creases. G Kindlmann, X Tricoche, and C-F Westin. Medical Image Analysis, 11(5):492–502, October 2007.
[doi]   [pdf]   [bib]
MICCAI
2007
Geodesic-Loxodromes for Diffusion Tensor Interpolation and Difference Measurement. G Kindlmann, R San José Estépar, M Niethammer, S Haker, and C-F Westin. In Proceedings of the International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2007, Part I, volume 4792 of Lecture Notes in Computer Science, pages 1–9. Springer, October–November 2007.
[doi]   [pdf]   [bib]   [slides]
FIMH
2007
Open-Source Environment for Interactive Finite Element Modeling of Optimal ICD Electrode Placement. M Jolley, J Stinstra, D Weinstein, S Pieper, R San José Estépar, G Kindlmann, R MacLeod, DH Brooks, and JK Triedman. In Functional Imaging and Modeling of the Heart (Proceedings 4th International Conference), volume 4466 of Lecture Notes in Computer Science, pages 373–382. Springer, June 2007.
[doi]   [pdf]   [bib]
MICCAI
2006b
Diffusion k-tensor estimation from Q-ball imaging using discretized principal axes. Ø Bergmann, G Kindlmann, A Lundervold, and C-F Westin. In Proceedings of the International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2006, Part II, volume 4191 of Lecture Notes in Computer Science, pages 268–275. Springer, October 2006.
[doi]   [pdf]   [bib]
MICCAI
2006
Anisotropy Creases Delineate White Matter Structure in Diffusion Tensor MRI. G Kindlmann, X Tricoche, and C-F Westin. In Proceedings of the International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2006, Part I, volume 4190 of Lecture Notes in Computer Science, pages 126–133. Springer, October 2006.
[doi]   [pdf]   [bib]   [slides]
VIS
2006
Diffusion Tensor Visualization with Glyph Packing. G Kindlmann and C-F Westin. IEEE Transactions on Visualization and Computer Graphics (Proceedings IEEE Visualization Conference and IEEE Symposium on Information Visualization), 12(5):1329–1335, September–October 2006.
[doi]   [pdf]   [bib]   [slides]
MRM
2006
Orthogonal tensor invariants and the analysis of diffusion tensor magnetic resonance images. DB Ennis and G Kindlmann. Magnetic Resonance in Medicine, 55(1):136–146, January 2006.
[doi]   [pdf]   [bib]
MRM
2005
Visualization of tensor fields using superquadric glyphs. DB Ennis, G Kindlman, I Rodriguez, PA Helm, and ER McVeigh. Magnetic Resonance in Medicine, 53(1):169—176, December 2005.
[doi]   [pdf]   [bib]
MI
2005
Practical Vessel Imaging by Computed Tomography in Live Transgenic Mouse Models for Human Tumors. GL Kindlmann, DM Weinstein, GM Jones, CR Johnson, MR Capecchi, and C Keller. Molecular Imaging, 4(4):417–424, October–December 2005.
[pdf]   [bib]   [more info]
TVCG
2005
Reconstruction and Visualization of Planetary Nebulae. M Magnor, G Kindlmann, C Hansen, and N Duric. IEEE Transactions on Visualization and Computer Graphics, 11(5):485–496, September–October 2005.
[doi]   [pdf]   [bib]
VIS
2004b
Constrained Inverse Volume Rendering for Planetary Nebulae. M Magnor, G Kindlmann, C Hansen, and N Duric. In Proceedings of IEEE Visualization, pages 83–90, October 2004.
[doi]   [pdf]   [bib]
VIS
2004
Visualization of Intricate Flow Structures for Vortex Breakdown Analysis. X Tricoche, C Garth, G Kindlmann, E Deines, G Scheuermann, M Ruetten, and C Hansen. In Proceedings of IEEE Visualization, pages 187–194, October 2004.
[doi]   [pdf]   [bib]
VisSym
2004
Superquadric Tensor Glyphs. G Kindlmann. In Proceedings of the Joint Eurographics - IEEE TCVG Symposium on Visualization ("VisSym"), pages 147–154, May 2004.
[doi]   [pdf]   [bib]   [slides]   [code]
VIS
2003
Curvature-Based Transfer Functions for Direct Volume Rendering: Methods and Applications. G Kindlmann, R Whitaker, T Tasdizen, and T Möller. In Proceedings of IEEE Visualization, pages 513–520, October 2003.
[doi]   [pdf]   [bib]   [slides]   [code]
VIS
2002
Face-based Luminance Matching for Perceptual Colormap Generation. G Kindlmann, E Reinhard, and S Creem. In Proceedings of IEEE Visualization, pages 299–306, October 2002.
[doi]   [pdf]   [bib]   [slides]
TVCG
2002
Multidimensional Transfer Functions for Interactive Volume Rendering. J Kniss, G Kindlmann, and C Hansen. IEEE Transactions on Visualization and Computer Graphics, 8(3):270–285, July 2002.
[doi]   [pdf]   [bib]
VIS
2001
Interactive Volume Rendering Using Multi-Dimensional Transfer Functions and Direct Manipulation Widgets. J Kniss, G Kindlmann, and C Hansen. In Proceedings of IEEE Visualization, pages 255–262,562, October 2001. (Awarded Best Paper).
[doi]   [pdf]   [bib]   [slides]
MRM
2000
A Geometric Analysis of Diffusion Tensor Measurements of the Human Brain. AL Alexander, K Hasan, G Kindlmann, DL Parker, and JS Tsuruda. Magnetic Resonance in Medicine, 44(2):283–291, August 2000.
[doi]   [pdf]   [bib]
TVCG
2000
Strategies for Direct Volume Rendering of Diffusion Tensor Fields. G Kindlmann, D Weinstein, and D Hart. IEEE Transactions on Visualization and Computer Graphics, 6(2):124–138, April–June 2000.
[doi]   [pdf]   [bib]
C
1999
Interactive Simulation and Visualization. C Johnson, SG Parker, C Hansen, GL Kindlmann, and Y Livnat. IEEE Computer, 32(12):59–65, December 1999.
[doi]   [pdf]   [bib]
VIS
1999b
Hue-Balls and Lit-Tensors for Direct Volume Rendering of Diffusion Tensor Fields. G Kindlmann and D Weinstein. In Proceedings of the IEEE Conference on Visualization '99, pages 183–189,524, October 1999. (Awarded Best Paper).
[doi]   [pdf]   [bib]   [slides]
VIS
1999
Tensorlines: Advection-Diffusion based Propagation through Diffusion Tensor Fields. DM Weinstein, GL Kindlmann, and EC Lundberg. In Proceedings of the IEEE Conference on Visualization '99, pages 249–253,530, October 1999.
[doi]   [pdf]   [bib]   [slides]
VV
1998
Semi-Automatic Generation of Transfer Functions for Direct Volume Rendering. G Kindlmann and JW Durkin. In IEEE Symposium On Volume Visualization, pages 79–86,170, October 1998. (Awarded Best Paper).
[doi]   [pdf]   [bib]   [slides]
SAHPC
1996
Implementing a Collaboratory for Microscopic Digital Anatomy. SJ Young, GGY Fan, D Hessler, S Lamont, TT Elvins, M Hadida-Hassan, GA Hanyzewski, JW Durkin, P Hubbard, G Kindlmann, E Wong, D Greenberg, S Karin, and MH Ellisman. Supercomputer Applications and High Performance Computing, 10(2/3):170–181, June 1996.
[doi]   [bib]

Abstracts, posters, workshop or short papers

BioVis
2016
Visualizing the Trajectories and Contexts of Facial Branchiomotor Neuron Pioneers, T Huynh, A Beiriger, V Prince, and G Kindlmann. Poster session, BioVis 2016, October 2016.
[pdf]   [bib]
PDV
2016
Algebraic Visualization Design for Pedagogy, G Kindlmann and C Scheidegger. IEEE VIS Workshop on Pedagogy of Data Visualization, October 2016.
[pdf]   [bib]   [slides]
C4PGV
2016
Sketching a Palette of Visualization Theories, G Kindlmann and C Scheidegger. IEEE VIS Workshop on Creation, Curation, Critique and Conditioning of Principles and Guidelines in Visualization, October 2016.
[pdf]   [bib]   [slides]
SDB
2016
Developmental origins of the pioneer neuron and its role in facial branchiomotor neuron migration. A Beiriger, S Wanner, G Kindlmann, and V Prince. In 75th Annual Meeting Society for Developmental Biology, August 2016.
[bib]
CPC
2016
EIN: An Intermediate Representation for Compiling Tensor Calculus. C Chiw, GL Kindlman, and J Reppy. In 19th Workshop on Compilers for Parallel Computing (CPC 2016), July 2016.
[pdf]   [bib]   [slides]
ISBI
2012b
Automatic airway analysis for genome-wide association studies in COPD. R San José Estépar, JC Ross, GL Kindlmann, A Díaz, Y Okajima, R Kikinis, C-F Westin, EK Silverman, and GR Washko. In Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI), pages 1467–1470, May 2012.
[doi]   [pdf]   [bib]
ISBI
2012
Computational vascular morphometry for the assessment of pulmonary vascular disease based on scale-space particles. R San José Estépar, JC Ross, K Krissian, T Schultz, GR Washko, and GL Kindlmann. In Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI), pages 1479–1482, May 2012.
[doi]   [pdf]   [bib]
VIS
2011
Diderot: A Parallel DSL for Computing on Multi-Dimensional Tensor Fields, N Seltzer, L Samuels, J Reppy, and GL Kindlmann. Poster session, VisWeek 2011, October 2011. (Awarded Best Poster).
[pdf]   [bib]
ATS
2011
Airway Extraction In Inspiratory Volumetric CT Using Scale-Space Particles. R San José Estépar, JC Ross, GL Kindlmann, AA Díaz, EK Silverman, GR Washko, and COPDGene Investigators. In American Thoracic Society International Conference Abstracts, volume 183, page A4611. May 2011.
[doi]   [pdf]   [bib]
ISMRM
2009
Automatic Segmentation of White Matter Structures from DTI Using Tensor Invariants and Tensor Orientation. R de Luis García, C Alberola-López, G Kindlmann, and C-F Westin. In Proceedings of the International Society for Magnetic Resonance in Medicine (ISMRM), page 856, April 2009.
[pdf]   [bib]
HBM
2008
Simulated diffusion dataset for multi-tensor fiber tractography. AA Qazi, G Kindlmann, and C-F Westin. In Proceedings of 14th Annual Meeting of the Organization for Human Brain Mapping, June 2008.
[pdf]   [bib]
ISMRM
2008
Quantification of white matter fiber orientation at tumor margins with diffusion tensor invariant gradients. G Kindlmann, S Whalen, RO Suarez, AJ Golby, and C-F Westin. In Proceedings of the International Society for Magnetic Resonance in Medicine (ISMRM), page 429, May 2008.
[pdf]   [bib]   [slides]
ISBI
2007
Two-Tensor Fiber Tractography. Ø Bergmann, G Kindlmann, S Peled, and C-F Westin. In Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI), pages 796–799, April 2007.
[doi]   [pdf]   [bib]
ISMRM
2006
Application of Novel Directionally Encoded Colormaps for Isolating Linear Anisotropic Structures in Human Brain Diffusion Tensor Magnetic Resonance Imaging. DB Ennis, G Kindlmann, M Mogensen, T Vertinksy, SW Atlas, and R Bammer. In Proceedings of the International Society for Magnetic Resonance in Medicine (ISMRM), page 3164, May 2006.
[pdf]   [bib]
ISMRM
2005
Orthogonal tensor decomposition for analysis of DTMRI anisotropy. DB Ennis and G Kindlmann. In Proceedings of the International Society for Magnetic Resonance in Medicine (ISMRM), page 627, May 2005.
[pdf]   [bib]
EMBS
2004
Visualization of Anatomic Covariance Tensor Fields. GL Kindlmann, DM Weinstein, AD Lee, AW Toga, and PM Thompson. In Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBS), volume 1, pages 1842–1845, September 2004.
[doi]   [pdf]   [bib]   [slides]
ISMRM
2004
Visualization of High-Resolution Myocardial Strain and Diffusion Tensor using Super-Quadric Glyphs. DB Ennis, G Kindlmann, PA Helm, I Rodriguez, and ER McVeigh. In Proceedings of the International Society for Magnetic Resonance in Medicine (ISMRM), page 2487, May 2004.
[pdf]   [bib]
ISMRM
2004b
An Algorithm for Moment-Based Global Registration of Echo Planar Diffusion-Weighted Images. G Kindlmann, AL Alexander, M Lazar, J Lee, T Tasdizen, and R Whitaker. In Proceedings of the International Society for Magnetic Resonance in Medicine (ISMRM), page 2200, May 2004.
[pdf]   [bib]
ISMRM
2000
A Geometric Analysis of Diffusion Tensor Measurements of the Human Brain. AL Alexander, K Hasan, G Kindlmann, DL Parker, and JS Tsuruda. In Proceedings of the International Society for Magnetic Resonance in Medicine (ISMRM), page 86, 2000.
[pdf]   [bib]

Invited papers

CR
2017
SlicerDMRI: Open Source Diffusion MRI Software for Brain Cancer Research. I Norton, WI Essayed, F Zhang, S Pujol, A Yarmarkovich, AJ Golby, G Kindlmann, D Wasserman, R San José Estépar, Y Rathi, S Pieper, R Kikinis, HJ Johnson, C-F Westin, and LJ O'Donnell. Cancer Research, 77(21):e101–e103, November 2017.
[doi]   [bib]
CGnA
2014
Visual Embedding: A Model for Visualization. Ç Demiralp, CE Scheidegger, GL Kindlmann, DH Laidlaw, and J Heer. IEEE Computer Graphics and Applications, 34(1):10–15, January–February 2014.
[doi]   [pdf]   [bib]
CG
2004
Scientific Visualization in Small Animal Imaging. G Kindlmann, RA Normann, A Badi, C Keller, GM Jones, and CR Johnson. ACM SIGGRAPH Computer Graphics, 38(2):4–7, May 2004.
[doi]   [pdf]   [bib]
CG
2001
Computational Field Visualization. C Johnson, D Brederson, C Hansen, M Ikits, G Kindlmann, Y Livnat, S Parker, D Weinstein, and R Whitaker. ACM SIGGRAPH Computer Graphics, 35(4):5–9, November 2001.
[doi]   [pdf]   [bib]
CGnA
2001
The Transfer Function Bake-Off. H Pfister, B Lorensen, C Bajaj, G Kindlmann, W Schroeder, LS Avila, K Martin, R Machiraju, and J Lee. IEEE Computer Graphics and Applications, 21(3):16–22, May–June 2001.
[doi]   [pdf]   [bib]

Book Chapters

MnV
2014
Fuzzy Fibers: Uncertainty in dMRI Tractography. T Schultz, A Vilanova, R Brecheisen, and G Kindlmann. In Scientific Visualization: Uncertainty, Multifield, Biomedical, and Scalable Visualization, Mathematics and Visualization, pages 79–92. Springer, September 2014.
[pdf]   [bib]   [more info]
dMRI
2013
Cross-Subject Comparison of Local Diffusion MRI Parameters. SM Smith, G Kindlmann, and S Jbabdi. In Diffusion MRI: From Quantitative Measurement to In vivo Neuroanatomy, chapter 10, pages 209–239. Academic Press - Elsevier, second edition, 2013.
[doi]   [bib]
APR
2009
Practical and Intuitive Basis for Tensor Field Processing with Invariant Gradients and Rotation Tangents. GL Kindlmann and C-F Westin. In Tensors in Image Processing and Computer Vision, Advances in Pattern Recognition, pages 299–314. Springer, 2009.
[doi]   [pdf]   [bib]
MnV
2006b
Tensor Invariants and their Gradients. G Kindlmann. In Visualization and Processing of Tensor Fields, Mathematics and Visualization, pages 215–224. Springer, 2006.
[doi]   [pdf]   [bib]
MnV
2006
An Introduction to Visualization of Diffusion Tensor Imaging and Its Applications. A Vilanova, S Zhang, G Kindlmann, and D Laidlaw. In Visualization and Processing of Tensor Fields, Mathematics and Visualization, pages 121–153. Springer, 2006.
[doi]   [pdf]   [bib]
VH
2005
Multidimensional Transfer Functions for Volume Rendering. J Kniss, G Kindlmann, and C Hansen. In The Visualization Handbook, chapter 9, pages 189–209. Acadmic Press - Elsevier, 2005.
[doi]   [pdf]   [bib]
VH
2005b
Diffusion Tensor MRI Visualization. S Zhang, DH Laidlaw, and G Kindlmann. In The Visualization Handbook, chapter 16, pages 327–340. Acadmic Press - Elsevier, 2005.
[doi]   [pdf]   [bib]
MU
2001
Computational Field Visualization. CR Johnson, Y Livnat, L Zhukov, D Hart, and G Kindlmann. In Mathematics Unlimited - 2001 and Beyond, volume 2, pages 605–630. Springer, 2001.
[bib]

Graduate Theses

PhD
2004
Visualization and Analysis of Diffusion Tensor Fields. G Kindlmann. PhD thesis, The University of Utah, Salt Lake City, Utah, September 2004.
[pdf]   [bib]   [more info]
MS
1999
Semi-Automatic Generation of Transfer Functions for Direct Volume Rendering. G Kindlmann. Master's thesis, Cornell University, Ithaca, New York, January 1999.
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