The following are some additional references that have been suggested for use: --------------------------------- Anderson S (1981) Shotgun DNA sequencing using cloned DNase 1- generated fragments. Nucleic Acids Res 10: 3015-3027 Bouck JB, Metzker ML, and Gibbs RA (2000) Shotgun sample sequence comparisons between mouse and human genomes. Nature Genet 25: 31-33 Edwards A, Voss H, Rice P, Civitello A, Stegemann J, Schwager C, Zimmermann J, Erfle H, et al. (1990) Automated DNA sequencing of the human HPRT locus. Genomics 6, 593-608 Gardner RC, Howarth AJ, Hahn P, Brown-Luedi M, Shepherd RJ, Messing J (1981) The complete nucleotide sequence of an infectious clone of cauliflower mosaic virus by M13mp7 shotgun sequencing. Nucleic Acids Res 9: 2871-2888. Mural RJ, Adams MD, Myers EW, Smith HO, Miklos GL, Wides R, Halpern A, Li PW, et al. (2002) A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Science 296, 1661-1671 Sanger F, Coulson AR, Hong GF, Hill DF, Petersen GB (1982) Nucleotide sequence of the bacteriophage lamda DNA. J Mol Biol 162: 729-773 Waterston RH, Lander ES, and Sulston JE (2003) More on the sequencing of the human genome. Proc Natl Acad Sci 100: 3022-3024 ---------------------------------- Aach J, Bulyk ML, Church GM, Comander J, Derti A, Shendure J (2001) Computational comparison of two draft sequences of the human genome. Nature 409: 856-859 Aparicio S, Chapman J, Stupka E, Putnam N, Chia J, Dehal P, Christoffels A, Rash S, et al. (2002) Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science 297: 1301-1310 Batzoglou S, Jaffe DB, Stanley K, Butler J, Gnerre S, Mauceli E, Berger B, Mesirov JP, et al. (2002) ARACHNE: A whole-genome shotgun assembler Genome Res 12: 177-189 Bouck J, Miller W, Gorrell JH, Muzny D, Gibbs RA (1998) Analysis of the quality and utility of random shotgun sequencing at low redundancies. Genome Res 8: 1074-1084 Butler, Declan. Publication of Human Genomes Sparks Fresh Sequence Debate. Nature. 6 Feb. 2007 Butler, Declan. Venter's Drosophila 'Success' Set to Boost Human Genome Efforts Nature. 21 Oct. 1999. Celniker, Susan. Finishing a Whole Genome Shotgun: Release 3 of the Drosophila Biomed Central. 12 Mar. 2002 Collins FS, Patrinos A, Jordan E, Chakravarti A, Gesteland R, Walters L, Fearon E, Hartwelt L, et al. (1998) New goals for the US Human Genome Project: 1998-2003. Science 282: 682-689 Davies, Kevin Cracking the Genome Johns Hopkins Press, 2001 Fleischmann RD, Adams MD, White O, Clayton RA, Kirkness EF, Kerlavage AR, Bult CJ, Tomb JF (1995) Whole-genome random sequencing and assembly of haemophilus-influenza Rd. Science 269: 496-512 Fraser CM, Eisen JA, Salzberg SL (2000) Microbial genome sequencing. Nature 406: 799-803 Gibbs, RA (1995) Pressing ahead with the human genome sequence Nature Genetics 11: 121-125 Green ED (2001) Strategies for the systematic sequencing of complex genomes. Nat Rev Genet 2: 573-583 Green P (1997) Against a whole-genome shotgun. Genome Res 7: 410-417 Green P (2002) Whole-genome disassembly. Proc Natl Acad Sci 99: 4143-4144 Hartl DL (2000) Fly meets shotgun: shotgun wins. Nat Genet 24: 327-328 Istrail S, Sutton GG, Florea L, Halpern AL, Mobarry CM, Lippert R, Walenz B, Shatkay H, et al. (2004) Whole-genome shotgun assembly and comparison of human genome assemblies. Proc Natl Acad Sci 101: 1916-1921 Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, et al. (2001) Initial sequencing and analysis of the human genome. Nature 409: 860-921 Lipschutz, RJ, F. Taverner et al (1994) DNA sequence confidence estimation Genomics 19: 417-24 Marshall, E and E. Pennisi (1996) NIH launches the final push to sequence the genome. Science 272: 188-9 Marshall, E (2000) Human genome: Rival Genome Sequencers Celebrate a Milestone Together Science 288: 2294-5 Myers, Eugene W., and James L. Weber. Human Whole Genome Shotgun Sequencing. Genome.Org. 1997. Myers, Gene, and Eric Anson. Algorithms for Whole Genome Shotgun Sequencing. . Myers G (1999) Whole-genome DNA sequencing. Comput Sci Eng 1: 33-43 Myers EW, Sutton GG, Delcher AL, Dew IM, Fasulo DP, Flanigan MJ, Kravitz SA, Mobarry CM, et al. (2000) A whole-genome assembly of Drosophila. Science 287: 2196-2204 Myers EW, Sutton GG, Smith HO, Adams MD, Venter JC (2002) On the sequencing and assembly of the human genome. Proc Natl Acad Sci 99: 4145-4146 Patterson M (1998) Politicogenomics takes centre stage. Trends Genet 14: 259-260 Pevzner PA (2001) Assembling Puzzles from Preassembled Blocks Genome Research 11: 1461-2 Pevzner PA, Tang HX, Waterman MS (2001) An Eulerian path approach to DNA fragment assembly. Proc Natl Acad Sci 98: 9748-9753 Powledge, Tabitha M. Shotgun Sequencing Comes of Age The Scientist. 2002 Rabinowicz PD, Schutz K, Dedhia N, Yordan C, Parnell LD, Stein L, McCombie WR, Martienssen RA (1999) Differential methylation of genes and retrotransposons facilitates shotgun sequencing of the maize genome. Nat Genet 23: 305-308 Roach JC, Siegel AF, van den Engh G, Trask B, Hood L (1999) Gaps in the Human Genome Project. Nature 401: 843-845 Roberts, L. (2001) Controversial from the start. Science 291: 1182-8 Russo, Eugene. Behind the Sequence. The Scientist. 2001 Russo, Eugene. Negotiating the Human Genome. The Scientist. 19 Feb. 2001. Sanger, F, Nicklen, S, and Coulsen, AR (1977) DNA sequencing with chain terminating inhibitors. Proc Natl Acad Sci 74: 5463-5467 "Sequencing Methods." YourGenome.Org. 6 Feb. 2007 . She XW, Jiang ZX, Clark RL, Liu G, Cheng Z, Tuzun E, Church DM, Sutton G, et al. (2004) Shotgun sequence assembly and recent segmental duplications within the human genome. Nature 431: 927-930 Shreeve, James. The Genome War. 1st ed. Knopf, 2004. Sulston, John. The Common Thread. National Academies P, 2002 Tettelin H, Radune D, Kasif S, Khouri H, Salzberg SL (1999) Optimized multiplex PCR: Efficiently closing a whole-genome shotgun sequencing project. Genomics 62: 500-507 Trivedi, Bijal P. Sequencing the Genome. Genome News Network. 2 June 2000. Venter, Craig (1996) A new strategy for genome sequencing Nature 381: 364-6 Venter, Craig. The Sequence of the Human Genome. Science. 16 Feb. 2001. Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell M, et al. (2001) The sequence of the human genome. Science 291: 1304-+ Wade, Nicholas Academic Team Accuses Commercial Rival of Faulty Work on Genome. New York Times. 2 May 2001. Waterston RH, Lander ES, Sulston JE (2002) On the sequencing of the human genome. Proc Natl Acad Sci 99: 3712-3716 Weber JL, Myers EW (1997) Human whole-genome shotgun sequencing. Genome Res 7: 401-409 Yu J, Ni PX, Wong GKS (2006) Comparing the whole-genome-shotgun and map-based sequences of the rice genome. Trends Plant Sci 11: 387-391