The following list is complete as of November 2019, and may be more complete than those generated by Google Scholar, Pubmed, or DBLP. Full papers are either peer-reviewed journal articles, or peer-reviewed papers in conferences, or both (as with VIS). All [bib] bibtex entries have been created by hand to be as accurate and consistent as possible. For many conference papers [slides] of the presentation are available. See note at page bottom about availability of PDFs of papers.

Full peer-reviewed papers | Abstracts, posters, workshop or short papers | Invited papers | Book Chapters | Graduate Theses |

## Full peer-reviewed papers

VIS 2018 |
Looks Good To Me: Visualizations As Sanity Checks.
M Correll, M Li, GL Kindlmann, and
C Scheidegger.
IEEE Transactions on Visualization and Computer Graphics (Proceedings VIS
2018), 25(1):830–839, January 2019.
[doi] [pdf] [bib] [slides] [more info] |

EV 2018 |
Rendering and Extracting Extremal Features in 3D
Fields.
GL Kindlmann, C Chiw, T Huynh,
A Gyulassy, J Reppy, and
PT Bremer.
Computer Graphics Forum (Proceedings of the Eurographics/IEEE-VGTC
Conference on Visualization "EuroVis"), 37(3):525–536, June 2018.
(Awarded Best Paper).
[doi] [pdf] [bib] [slides] |

EV 2016 |
Glyphs for Asymmetric Second-Order 2D
Tensors.
N Seltzer and G Kindlmann.
Computer Graphics Forum (Proceedings of the Eurographics/IEEE-VGTC
Conference on Visualization "EuroVis"), 35(3):141–150, June 2016.
(Honorable Mention for Best Paper).
[doi] [pdf] [bib] [slides] |

VIS 2015 |
Diderot: a Domain-Specific Language for Portable
Parallel Scientific Visualization and Image Analysis.
G Kindlmann, C Chiw, N Seltzer,
L Samuels, and J Reppy.
IEEE Transactions on Visualization and Computer Graphics (Proceedings VIS
2015), 22(1):867–876, January 2016.
[doi] [pdf] [bib] [slides] [video] |

VIS 2014 |
An Algebraic Process for Visualization Design.
G Kindlmann and C Scheidegger.
IEEE Transactions on Visualization and Computer Graphics (Proceedings VIS
2014), 20(12):2181–2190, November 2014.
(Honorable Mention for Best Paper).
[doi] [pdf] [bib] [video] [more info] |

PNAS 2014 |
Helicity conservation by flow across scales in
reconnecting vortex links and knots.
MW Scheeler, D Kleckner,
D Proment, GL Kindlmann, and WTM
Irvine.
Proceedings of the National Academy of Sciences,
111(43):15350–15355, October 2014.
[doi] [bib] |

MIA 2014 |
The effects of noise over the complete space of
diffusion tensor shape.
JK Gahm, G Kindlmann, and
DB Ennis.
Medical Image Analysis, 18(1):197–210, January 2014.
[doi] [bib] |

MP 2013 |
Pulmonary lobe segmentation based on ridge surface
sampling and shape model fitting.
JC Ross, GL Kindlmann, Y Okajima,
H Hatabu, AA Díaz,
EK Silverman, GR Washko, J Dy,
and R San José Estépar.
Medical Physics, 40(12):121903, December 2013.
[doi] [bib] |

VIS 2013 |
Open-Box Spectral Clustering: Applications to Medical
Image Analysis.
T Schultz and G Kindlmann.
IEEE Transactions on Visualization and Computer Graphics (Proceedings of
VIS 2013), 19(12):2100–2108, December 2013.
[doi] [pdf] [bib] [video] [more info] |

AJRCCM 2013 |
Computed Tomographic Measures of
Pulmonary Vascular Morphology in Smokers and Their Clinical
Implications.
R San José Estépar, GL Kinney,
JL Black-Shinn, RP Bowler,
GL Kindlmann, JC Ross,
R Kikinis, MK Han, CE Come,
AA Díaz, MH Cho, CP Hersh,
JD Schroeder, JJ Reilly,
DA Lynch, JD Crapo, JM Wells,
MT Dransfield, JE Hokanson,
GR Washko, and COPDGene Study.
American Journal of Respiratory and Critical Care Medicine,
188(2):231—239, July 2013.
[doi] [pdf] [bib] |

MICCAI 2012 |
Linear Invariant Tensor Interpolation Applied to
Cardiac Diffusion Tensor MRI.
JK Gahm, N Wisniewski,
G Kindlmann, GL Kung, WS Klug,
A Garfinkel, and DB Ennis.
In Proceedings of the International Conference on Medical Image Computing
and Computer-Assisted Intervention (MICCAI) 2012, Part II, volume 7511
of Lecture Notes in Computer Science, pages 494–501. Springer,
October 2012.
[doi] [pdf] [bib] |

PLDI 2012 |
Diderot: A Parallel DSL for Image Analysis and
Visualization.
C Chiw, G Kindlmann, J Reppy,
L Samuels, and N Seltzer.
In Proceedings of the 33rd ACM SIGPLAN Conference on Programming Language
Design and Implementation (PLDI), pages 111–120, June 2012.
(alphabetical author order).
[doi] [pdf] [bib] [slides] |

NI 2011 |
DTI measures in crossing-fibre areas: increased
diffusion anisotropy reveals early white matter alteration in MCI and mild
Alzheimer's disease.
G Douaud, S Jbabdi, TE Behrens,
RA Menke, A Gass, AU Monsch,
A Rao, B Whitcher, G Kindlmann,
PM Matthews, and S Smith.
NeuroImage, 55(3):880–890, April 2011.
[doi] [bib] |

NS 2011 |
Interactive Diffusion Tensor Tractography Visualization
for Neurosurgical Planning.
AJ Golby, G Kindlmann, I Norton,
A Yarmarkovich, S Pieper, and
R Kikinis.
Neurosurgery, 68(2):496–505, February 2011.
[doi] [bib] [more info] |

VIS 2010 |
Superquadric Glyphs for Symmetric Second-Order
Tensors.
T Schultz and GL Kindlmann.
IEEE Transactions on Visualization and Computer Graphics (Proceedings of
VisWeek 2010), 16(6):1595–1604, November–December 2010.
[doi] [pdf] [bib] [slides] [code] |

MICCAI 2010 |
Multi-Diffusion-Tensor Fitting via Spherical
Deconvolution: A Unifying Framework.
T Schultz, C-F Westin, and
G Kindlmann.
In Proceedings of the International Conference on Medical Image Computing
and Computer-Assisted Intervention (MICCAI) 2010, Part I, volume 6361
of Lecture Notes in Computer Science, pages 674–681. Springer,
September 2010.
[doi] [pdf] [bib] |

SPIE 2010 |
Optimizing synchrotron microCT
for high-throughput phenotyping of zebrafish.
PJ La Rivière, D Clark,
A Rojek, P Vargas, X Xiao,
F DeCarlo, G Kindlmann, and
K Cheng.
In Proceedings of the SPIE (Developments in X-Ray Tomography VII),
volume 7804, page 78040M, September 2010.
[doi] [bib] |

MICCAI 2010b |
Automatic Lung Lobe Segmentation Using Particles, Thin
Plate Splines, and Maximum a Posteriori Estimation.
JC Ross, R San José Estépar,
G Kindlmann, A Díaz,
C-F Westin, EK Silverman, and
GR Washko.
In Proceedings of the International Conference on Medical Image Computing
and Computer-Assisted Intervention (MICCAI) 2010, Part III, volume
6363 of Lecture Notes in Computer Science, pages 163–171.
Springer, September 2010.
[doi] [pdf] [bib] |

EuroVis 2010 |
A Maximum Enhancing Higher-Order Tensor Glyph.
T Schultz and G Kindlmann.
Computer Graphics Forum (Proceedings of the Eurographics/IEEE-VGTC
Symposium on Visualization ("EuroVis") 2010), 29(3):1143–1152, June
2010.
[doi] [pdf] [bib] |

IJCARS 2010 |
Direct visualization of fiber information by
coherence.
M Hlawitschka, C Garth,
X Tricoche, G Kindlmann,
G Scheuermann, KI Joy, and
B Hamann.
International Journal of Computer Assisted Radiology and Surgery,
5(2):125–131, March 2010.
[doi] [pdf] [bib] |

NI 2010 |
Local White Matter Geometry from Diffusion Tensor
Gradients.
P Savadjiev, GL Kindlmann,
S Bouix, ME Shenton, and
C-F Westin.
NeuroImage, 49(4):3175–86, February 2010.
[doi] [bib] |

VIS 2009 |
Sampling and Visualizing Creases with Scale-Space
Particles.
GL Kindlmann, R San José Estépar,
SM Smith, and C-F Westin.
IEEE Transactions on Visualization and Computer Graphics (Proceedings
IEEE VisWeek), 15(6):1415–1424, November–December 2009.
[doi] [pdf] [bib] [slides] [code] |

MICCAI 2009 |
Local White Matter Geometry Indices from Diffusion
Tensor Gradients.
P Savadjiev, G Kindlmann, S Bouix,
ME Shenton, and C-F Westin.
In Proceedings of the International Conference on Medical Image Computing
and Computer-Assisted Intervention (MICCAI) 2009, Part I, volume 5761
of Lecture Notes in Computer Science, pages 345–352. Springer,
September 2009.
[doi] [pdf] [bib] |

NI 2009 |
Resolving crossings in the corticospinal tract by
two-tensor streamline tractography: Method and clinical assessment using
fMRI.
AA Qazi, A Radmanesh, L O'Donnell,
G Kindlmann, S Peled, S Whalen,
C-F Westin, and AJ Golby.
NeuroImage, 47(Supplement 2):T98–T106, August 2009.
[doi] [bib] [more info] |

SR 2009 |
Increased Diffusivity in Superior Temporal Gyrus in
Patients with Schizophrenia: A Diffusion Tensor Imaging Study.
KU Lee, T Yoshida, M Kubicki,
S Bouix, C-F Westin, G Kindlmann,
M Niznikiewicz, A Cohen,
RW McCarley, and ME Shenton.
Schizophrenia Research, 1-3(108):33–40, March 2009.
[doi] [bib] |

VIS 2008 |
Invariant Crease Lines for Topological and Structural
Analysis of Tensor Fields.
X Tricoche, G Kindlmann, and
C-F Westin.
IEEE Transactions on Visualization and Computer Graphics (Proceedings of
VisWeek 2008), 14(6):1627–1634, November–December 2008.
[doi] [pdf] [bib] |

MMBIA 2008 |
Two-tensor streamline tractography through white matter
intra-voxel fiber crossings: Assessed by fMRI.
AA Qazi, G Kindlmann, L O'Donnell,
S Peled, A Radmanesh, S Whalen,
A Golby, and C-F Westin.
In Proceedings of IEEE Computer Vision and Pattern Recognition Workshops:
Mathematical Methods in Biomedical Image Analysis (MMBIA), pages 1–8,
June 2008.
[doi] [pdf] [bib] |

AR 2008 |
Optimization of Volumetric Computed Tomography
for Skeletal Analysis of Model Genetic Organisms.
SX Vasquez, MS Hansen, AN Bahadur,
MF Hockin, GL Kindlmann,
L Nevell, IQ Wu, DJ Grunwald,
DM Weinstein, GM Jones,
CR Johnson, JL Vandeberg,
MR Capecchi, and C Keller.
The Anatomical Record, 291(5):475–487, May 2008.
[doi] [pdf] [bib] |

TMI 2007 |
Diffusion Tensor Analysis with Invariant Gradients and
Rotation Tangents.
G Kindlmann, DB Ennis,
RT Whitaker, and C-F Westin.
IEEE Transactions on Medical Imaging, 26(11):1483–1499, November
2007.
[doi] [pdf] [bib] |

MICCAI 2007 |
Geodesic-Loxodromes for Diffusion Tensor Interpolation
and Difference Measurement.
G Kindlmann, R San José Estépar,
M Niethammer, S Haker, and
C-F Westin.
In Proceedings of the International Conference on Medical Image Computing
and Computer-Assisted Intervention (MICCAI) 2007, Part I, volume 4792
of Lecture Notes in Computer Science, pages 1–9. Springer,
October–November 2007.
[doi] [pdf] [bib] [slides] |

MIA 2007 |
Delineating white matter structure in diffusion tensor
MRI with anisotropy creases.
G Kindlmann, X Tricoche, and
C-F Westin.
Medical Image Analysis, 11(5):492–502, October 2007.
[doi] [pdf] [bib] |

FIMH 2007 |
Open-Source Environment for Interactive Finite Element
Modeling of Optimal ICD Electrode Placement.
M Jolley, J Stinstra, D Weinstein,
S Pieper, R San José Estépar,
G Kindlmann, R MacLeod,
DH Brooks, and JK Triedman.
In Functional Imaging and Modeling of the Heart (Proceedings 4th
International Conference), volume 4466 of Lecture Notes in
Computer Science, pages 373–382. Springer, June 2007.
[doi] [pdf] [bib] |

MICCAI 2006 |
Anisotropy Creases Delineate White Matter Structure in
Diffusion Tensor MRI.
G Kindlmann, X Tricoche, and
C-F Westin.
In Proceedings of the International Conference on Medical Image Computing
and Computer-Assisted Intervention (MICCAI) 2006, Part I, volume 4190
of Lecture Notes in Computer Science, pages 126–133. Springer,
October 2006.
[doi] [pdf] [bib] [slides] |

MICCAI 2006b |
Diffusion k-tensor estimation from Q-ball
imaging using discretized principal axes.
Ø Bergmann, G Kindlmann,
A Lundervold, and C-F Westin.
In Proceedings of the International Conference on Medical Image Computing
and Computer-Assisted Intervention (MICCAI) 2006, Part II, volume 4191
of Lecture Notes in Computer Science, pages 268–275. Springer,
October 2006.
[doi] [pdf] [bib] |

VIS 2006 |
Diffusion Tensor Visualization with Glyph Packing.
G Kindlmann and C-F Westin.
IEEE Transactions on Visualization and Computer Graphics (Proceedings
IEEE Visualization Conference and IEEE Symposium on Information
Visualization), 12(5):1329–1335, September–October 2006.
[doi] [pdf] [bib] [slides] |

MRM 2006 |
Orthogonal tensor invariants and the analysis of
diffusion tensor magnetic resonance images.
DB Ennis and G Kindlmann.
Magnetic Resonance in Medicine, 55(1):136–146, January 2006.
[doi] [pdf] [bib] |

MRM 2005 |
Visualization of tensor fields using superquadric
glyphs.
DB Ennis, G Kindlman, I Rodriguez,
PA Helm, and ER McVeigh.
Magnetic Resonance in Medicine, 53(1):169—176, December 2005.
[doi] [pdf] [bib] |

MI 2005 |
Practical Vessel Imaging by Computed Tomography in Live
Transgenic Mouse Models for Human Tumors.
GL Kindlmann, DM Weinstein,
GM Jones, CR Johnson,
MR Capecchi, and C Keller.
Molecular Imaging, 4(4):417–424, October–December 2005.
[pdf] [bib] [more info] |

TVCG 2005 |
Reconstruction and Visualization of Planetary
Nebulae.
M Magnor, G Kindlmann, C Hansen,
and N Duric.
IEEE Transactions on Visualization and Computer Graphics,
11(5):485–496, September–October 2005.
[doi] [pdf] [bib] |

VIS 2004b |
Constrained Inverse Volume Rendering for
Planetary Nebulae.
M Magnor, G Kindlmann, C Hansen,
and N Duric.
In Proceedings of IEEE Visualization, pages 83–90, October 2004.
[doi] [pdf] [bib] |

VIS 2004 |
Visualization of Intricate Flow Structures for
Vortex Breakdown Analysis.
X Tricoche, C Garth, G Kindlmann,
E Deines, G Scheuermann,
M Ruetten, and C Hansen.
In Proceedings of IEEE Visualization, pages 187–194, October
2004.
[doi] [pdf] [bib] |

VisSym 2004 |
Superquadric Tensor Glyphs.
G Kindlmann.
In Proceedings of the Joint Eurographics - IEEE TCVG Symposium on
Visualization ("VisSym"), pages 147–154, May 2004.
[doi] [pdf] [bib] [slides] [code] |

VIS 2003 |
Curvature-Based Transfer Functions for Direct
Volume Rendering: Methods and Applications.
G Kindlmann, R Whitaker,
T Tasdizen, and T Möller.
In Proceedings of IEEE Visualization, pages 513–520, October
2003.
[doi] [pdf] [bib] [slides] [code] |

VIS 2002 |
Face-based Luminance Matching for Perceptual Colormap
Generation.
G Kindlmann, E Reinhard, and
S Creem.
In Proceedings of IEEE Visualization, pages 299–306, October
2002.
[doi] [pdf] [bib] [slides] |

TVCG 2002 |
Multidimensional Transfer Functions for Interactive
Volume Rendering.
J Kniss, G Kindlmann, and
C Hansen.
IEEE Transactions on Visualization and Computer Graphics,
8(3):270–285, July 2002.
[doi] [pdf] [bib] |

VIS 2001 |
Interactive Volume Rendering Using
Multi-Dimensional Transfer Functions and Direct Manipulation Widgets.
J Kniss, G Kindlmann, and
C Hansen.
In Proceedings of IEEE Visualization, pages 255–262,562, October
2001.
(Awarded Best Paper).
[doi] [pdf] [bib] [slides] |

MRM 2000 |
A Geometric Analysis of Diffusion Tensor
Measurements of the Human Brain.
AL Alexander, K Hasan,
G Kindlmann, DL Parker, and
JS Tsuruda.
Magnetic Resonance in Medicine, 44(2):283–291, August 2000.
[doi] [pdf] [bib] |

TVCG 2000 |
Strategies for Direct Volume Rendering of
Diffusion Tensor Fields.
G Kindlmann, D Weinstein, and
D Hart.
IEEE Transactions on Visualization and Computer Graphics,
6(2):124–138, April–June 2000.
[doi] [pdf] [bib] |

C 1999 |
Interactive Simulation and Visualization.
C Johnson, SG Parker, C Hansen,
GL Kindlmann, and Y Livnat.
IEEE Computer, 32(12):59–65, December 1999.
[doi] [pdf] [bib] |

VIS 1999b |
Hue-Balls and Lit-Tensors for Direct Volume Rendering
of Diffusion Tensor Fields.
G Kindlmann and D Weinstein.
In Proceedings of the IEEE Conference on Visualization '99, pages
183–189,524, October 1999.
(Awarded Best Paper).
[doi] [pdf] [bib] [slides] |

VIS 1999 |
Tensorlines: Advection-Diffusion based Propagation
through Diffusion Tensor Fields.
DM Weinstein, GL Kindlmann, and
EC Lundberg.
In Proceedings of the IEEE Conference on Visualization '99, pages
249–253,530, October 1999.
[doi] [pdf] [bib] [slides] |

VV 1998 |
Semi-Automatic Generation of Transfer Functions
for Direct Volume Rendering.
G Kindlmann and JW Durkin.
In IEEE Symposium On Volume Visualization, pages 79–86,170,
October 1998.
(Awarded Best Paper).
[doi] [pdf] [bib] [slides] |

SAHPC 1996 |
Implementing a Collaboratory for Microscopic Digital
Anatomy.
SJ Young, GGY Fan, D Hessler,
S Lamont, TT Elvins,
M Hadida-Hassan, GA Hanyzewski,
JW Durkin, P Hubbard,
G Kindlmann, E Wong,
D Greenberg, S Karin, and
MH Ellisman.
Supercomputer Applications and High Performance Computing,
10(2/3):170–181, June 1996.
[doi] [bib] |

## Abstracts, posters, workshop or short papers

VIS 2019 |
Point Movement in a DSL for Higher-Order FEM
Visualization.
T Collin, C Chiw, LR Scott,
J Reppy, and GL Kindlmann.
In Proceedings of the IEEE VIS Scientific Visualization Conference
(SciVis) Short Papers, October 2019.
[pdf] [bib] [slides] [video] |

EV 2019 |
Improving the Scalability of Interactive Visualization
Systems for Exploring Threaded Conversations.
AM McNutt and GL Kindlmann.
In Proceedings of the Eurographics Conference on Visualization "EuroVis"
- Posters, June 2019.
[doi] [pdf] [bib] [code] [more info] |

C4PGV 2018 |
Linting for Visualization: Towards a Practical
Automated Visualization Guidance System, A McNutt and
G Kindlmann.
2nd IEEE VIS Workshop on Creation, Curation,
Critique and Conditioning of Principles and Guidelines in Visualization
("VisGuides"), October 2018.
[pdf] [bib] [slides] [code] |

FEniCS 2018 |
Developing a compiler to understand finite element
data, T Collin, J Reppy,
G Kindlmann, and C Chiw.
2018 FEniCS Conference, March
2018.
[pdf] [bib] [more info] |

FEniCS 2018b |
Diderot: A Domain-Specific Language for Visualizing
FEniCS Functions, T Collin, H Morgan,
LR Scott, J Reppy, G Kindlmann,
and C Chiw.
2018 FEniCS Conference, March
2018.
[pdf] [bib] [more info] |

AST 2017 |
DATm:
Diderot's Automated Testing Model.
C Chiw, G Kindlmann, and J Reppy.
In Proceedings of the IEEE/ACM 12th International Workshop on Automation
of Software Testing (AST), pages 45–51, May 2017.
[doi] [pdf] [bib] [slides] |

C4PGV 2016 |
Sketching a Palette of Visualization
Theories, G Kindlmann and C Scheidegger.
IEEE VIS Workshop on Creation, Curation,
Critique and Conditioning of Principles and Guidelines in Visualization,
October 2016.
[pdf] [bib] [slides] |

BioVis 2016 |
Visualizing the Trajectories and Contexts of Facial
Branchiomotor Neuron Pioneers, T Huynh,
A Beiriger, V Prince, and
G Kindlmann.
Poster session, BioVis
2016, October 2016.
[pdf] [bib] |

PDV 2016 |
Algebraic Visualization Design for
Pedagogy, G Kindlmann and C Scheidegger.
IEEE VIS Workshop on
Pedagogy of Data
Visualization, October 2016.
[pdf] [bib] [slides] |

SDB 2016 |
Developmental origins of the pioneer neuron and its
role in facial branchiomotor neuron migration.
A Beiriger, S Wanner, G Kindlmann,
and V Prince.
In 75th Annual Meeting
Society for Developmental Biology, August 2016.
[bib] |

CPC 2016 |
EIN: An
Intermediate Representation for Compiling Tensor Calculus.
C Chiw, GL Kindlman, and J Reppy.
In 19th Workshop on Compilers for
Parallel Computing (CPC 2016), July 2016.
[pdf] [bib] [slides] |

ISBI 2012 |
Computational vascular
morphometry for the assessment of pulmonary vascular disease based on
scale-space particles.
R San José Estépar, JC Ross,
K Krissian, T Schultz,
GR Washko, and GL Kindlmann.
In Proceedings of the IEEE International Symposium on Biomedical Imaging
(ISBI), pages 1479–1482, May 2012.
[doi] [pdf] [bib] |

ISBI 2012b |
Automatic airway analysis for
genome-wide association studies in COPD.
R San José Estépar, JC Ross,
GL Kindlmann, A Díaz,
Y Okajima, R Kikinis, C-F Westin,
EK Silverman, and GR Washko.
In Proceedings of the IEEE International Symposium on Biomedical Imaging
(ISBI), pages 1467–1470, May 2012.
[doi] [pdf] [bib] |

VIS 2011 |
Diderot: A Parallel DSL for Computing on
Multi-Dimensional Tensor Fields, N Seltzer,
L Samuels, J Reppy, and
GL Kindlmann.
Poster session, VisWeek 2011, October 2011.
(Awarded Best Poster).
[pdf] [bib] |

ATS 2011 |
Airway Extraction In
Inspiratory Volumetric CT Using Scale-Space Particles.
R San José Estépar, JC Ross,
GL Kindlmann, AA Díaz,
EK Silverman, GR Washko, and
COPDGene Investigators.
In American Thoracic Society International Conference Abstracts,
volume 183, page A4611. May 2011.
[doi] [pdf] [bib] |

ISMRM 2009 |
Automatic Segmentation of White Matter
Structures from DTI Using Tensor Invariants and Tensor Orientation.
R de Luis García, C Alberola-López,
G Kindlmann, and C-F Westin.
In Proceedings of the International Society for Magnetic Resonance in
Medicine (ISMRM), page 856, April 2009.
[pdf] [bib] |

HBM 2008 |
Simulated diffusion dataset for multi-tensor
fiber tractography.
AA Qazi, G Kindlmann, and
C-F Westin.
In Proceedings of 14th Annual Meeting of the Organization for Human Brain
Mapping, June 2008.
[pdf] [bib] |

ISMRM 2008 |
Quantification of white matter fiber
orientation at tumor margins with diffusion tensor invariant gradients.
G Kindlmann, S Whalen, RO Suarez,
AJ Golby, and C-F Westin.
In Proceedings of the International Society for Magnetic Resonance in
Medicine (ISMRM), page 429, May 2008.
[pdf] [bib] [slides] |

ISBI 2007 |
Two-Tensor Fiber Tractography.
Ø Bergmann, G Kindlmann,
S Peled, and C-F Westin.
In Proceedings of the IEEE International Symposium on Biomedical Imaging
(ISBI), pages 796–799, April 2007.
[doi] [pdf] [bib] |

ISMRM 2006 |
Application of Novel Directionally Encoded
Colormaps for Isolating Linear Anisotropic Structures in Human Brain
Diffusion Tensor Magnetic Resonance Imaging.
DB Ennis, G Kindlmann, M Mogensen,
T Vertinksy, SW Atlas, and
R Bammer.
In Proceedings of the International Society for Magnetic Resonance in
Medicine (ISMRM), page 3164, May 2006.
[pdf] [bib] |

ISMRM 2005 |
Orthogonal tensor decomposition for analysis
of DTMRI anisotropy.
DB Ennis and G Kindlmann.
In Proceedings of the International Society for Magnetic Resonance in
Medicine (ISMRM), page 627, May 2005.
[pdf] [bib] |

EMBS 2004 |
Visualization of Anatomic Covariance Tensor
Fields.
GL Kindlmann, DM Weinstein,
AD Lee, AW Toga, and
PM Thompson.
In Proceedings of the Annual International Conference of the IEEE
Engineering in Medicine and Biology Society (EMBS), volume 1, pages
1842–1845, September 2004.
[doi] [pdf] [bib] [slides] |

ISMRM 2004b |
An Algorithm for Moment-Based Global
Registration of Echo Planar Diffusion-Weighted Images.
G Kindlmann, AL Alexander,
M Lazar, J Lee, T Tasdizen, and
R Whitaker.
In Proceedings of the International Society for Magnetic Resonance in
Medicine (ISMRM), page 2200, May 2004.
[pdf] [bib] |

ISMRM 2004 |
Visualization of High-Resolution Myocardial
Strain and Diffusion Tensor using Super-Quadric Glyphs.
DB Ennis, G Kindlmann, PA Helm,
I Rodriguez, and ER McVeigh.
In Proceedings of the International Society for Magnetic Resonance in
Medicine (ISMRM), page 2487, May 2004.
[pdf] [bib] |

ISMRM 2000 |
A Geometric Analysis of Diffusion Tensor
Measurements of the Human Brain.
AL Alexander, K Hasan,
G Kindlmann, DL Parker, and
JS Tsuruda.
In Proceedings of the International Society for Magnetic Resonance in
Medicine (ISMRM), page 86, 2000.
[pdf] [bib] |

## Invited papers

CR 2017 |
SlicerDMRI: Open Source Diffusion MRI Software
for Brain Cancer Research.
I Norton, WI Essayed, F Zhang,
S Pujol, A Yarmarkovich,
AJ Golby, G Kindlmann,
D Wasserman, R San José Estépar,
Y Rathi, S Pieper, R Kikinis,
HJ Johnson, C-F Westin, and
LJ O'Donnell.
Cancer Research, 77(21):e101–e103, November 2017.
[doi] [bib] |

CGnA 2014 |
Visual Embedding: A Model for Visualization.
Ç Demiralp, CE Scheidegger,
GL Kindlmann, DH Laidlaw, and
J Heer.
IEEE Computer Graphics and Applications, 34(1):10–15,
January–February 2014.
[doi] [pdf] [bib] |

CG 2004 |
Scientific Visualization in Small Animal
Imaging.
G Kindlmann, RA Normann, A Badi,
C Keller, GM Jones, and
CR Johnson.
ACM SIGGRAPH Computer Graphics, 38(2):4–7, May 2004.
[doi] [pdf] [bib] |

CG 2001 |
Computational Field Visualization.
C Johnson, D Brederson, C Hansen,
M Ikits, G Kindlmann, Y Livnat,
S Parker, D Weinstein, and
R Whitaker.
ACM SIGGRAPH Computer Graphics, 35(4):5–9, November 2001.
[doi] [pdf] [bib] |

CGnA 2001 |
The Transfer Function Bake-Off.
H Pfister, B Lorensen, C Bajaj,
G Kindlmann, W Schroeder,
LS Avila, K Martin, R Machiraju,
and J Lee.
IEEE Computer Graphics and Applications, 21(3):16–22, May–June
2001.
[doi] [pdf] [bib] |

## Book Chapters

MnV 2014 |
Fuzzy Fibers: Uncertainty in dMRI Tractography.
T Schultz, A Vilanova,
R Brecheisen, and G Kindlmann.
In Scientific Visualization: Uncertainty, Multifield, Biomedical, and
Scalable Visualization, Mathematics and Visualization, pages 79–92.
Springer, September 2014.
[pdf] [bib] [more info] |

dMRI 2013 |
Cross-Subject Comparison of Local Diffusion
MRI Parameters.
SM Smith, G Kindlmann, and
S Jbabdi.
In Diffusion MRI: From Quantitative Measurement to In vivo
Neuroanatomy, chapter 10, pages 209–239. Academic Press - Elsevier,
second edition, 2013.
[doi] [bib] |

APR 2009 |
Practical and Intuitive Basis for Tensor Field
Processing with Invariant Gradients and Rotation Tangents.
GL Kindlmann and C-F Westin.
In Tensors in Image Processing and Computer Vision, Advances in
Pattern Recognition, pages 299–314. Springer, 2009.
[doi] [pdf] [bib] |

MnV 2006b |
Tensor Invariants and their Gradients.
G Kindlmann.
In Visualization and Processing of Tensor Fields, Mathematics and
Visualization, pages 215–224. Springer, 2006.
[doi] [pdf] [bib] |

MnV 2006 |
An Introduction to Visualization of Diffusion Tensor
Imaging and Its Applications.
A Vilanova, S Zhang, G Kindlmann,
and D Laidlaw.
In Visualization and Processing of Tensor Fields, Mathematics and
Visualization, pages 121–153. Springer, 2006.
[doi] [pdf] [bib] |

VH 2005b |
Diffusion Tensor MRI Visualization.
S Zhang, DH Laidlaw, and
G Kindlmann.
In The Visualization Handbook, chapter 16, pages 327–340. Acadmic
Press - Elsevier, 2005.
[doi] [pdf] [bib] |

VH 2005 |
Multidimensional Transfer Functions for Volume
Rendering.
J Kniss, G Kindlmann, and
C Hansen.
In The Visualization Handbook, chapter 9, pages 189–209. Acadmic
Press - Elsevier, 2005.
[doi] [pdf] [bib] |

MU 2001 |
Computational Field Visualization.
CR Johnson, Y Livnat, L Zhukov,
D Hart, and G Kindlmann.
In Mathematics Unlimited - 2001 and Beyond, volume 2, pages
605–630. Springer, 2001.
[bib] |

## Graduate Theses

PhD 2004 |
Visualization and Analysis of Diffusion Tensor
Fields.
G Kindlmann.
PhD thesis, The University of Utah, Salt Lake City, Utah, September 2004.
[pdf] [bib] [more info] |

MS 1999 |
Semi-Automatic Generation of Transfer Functions for
Direct Volume Rendering.
G Kindlmann.
Master's thesis, Cornell University, Ithaca, New York, January 1999.
[pdf] [bib] [more info] |

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