First week: A crash course in computational complexity heavily biased toward quantum computing can be found in [2, Part 1] or [1, Ch. 3.1-3.2]. If you are interested in more details, see the excellent textbook [4]. Quantum Turing Machines were introduced in [5]. For a comprehensive treatment of circuit complexity I particularly recommend [6]. Reversible circuits: [3, Ch. 1.5] or [2, Ch, 7]; simulation of any classical computation with a reversible one (aka Garbage Removal Lemma): [3, Fig. 1.6] or [2, Lemma 7.2]. The physics of Landauer's principle is discussed in [1, Ch. 3.2.5], see also Wikipedia article. Matrix form of circuit computations: [3, Ch. 1.4]. Probabilistic computation: [2, Ch. 4.3] (for an in-depth treatment see [4, Ch. 1.7]). For doubly stochastic matrices, Birkhoff-von Neumann theorem and much more see e.g. [7]. Basic facts and notation from linear algebra (Hilbert spaces, tensor products, unit vectors as pure states of a quantum system, adjoint and unitary operators etc.) can be found in any of the three textbooks; I particularly recommend [1, Ch. 2.1]. Examples of unitary one-qubit gates (other than permutations): Pauli matrices and Hadamard gate. Dirac's notation.
Second week: Completeness result for exact realization: [2, Ch. 8.1]. Universal/complete bases: [2, Ch. 8.2, 8.3] or [3, Ch. 4.3, 4.4]. Simulation of probabilistic computations by quantum circuits: [3, Ch. 6.1]. Deutsch algorithm: [3, Ch. 6.3]. Our exposition of Deutsch-Jozsa closely follows the one given in [3, Ch. 6.4]. The Hidden Subgroup Problem will be thoroughly discussed later in the course, for now see [8] (and do drop me a word if you know of more recent developments). Simon's algorithm: [3, Ch. 6.5]. $BQP\subset PP$: see [1, Ch. 4.5.5] for a slightly weaker result. Oracle separation of $BPP$ and $BQP$: [5]; oracle separation of $BQP$ and $PH$: [9] (consult [4, Ch. 3.4] for oracle separations and [4, Ch. 5] for the polynomial hierarchy).
Third week: Grover's search algorithm: [3, Ch. 8.1]. Shor's algorithm. The reduction of factoring to order-finding goes back to Miller (1975). Our exposition is close to [2, Ch. 13.3] but the best shot at sometimes tedious technical details is [1, Appendix 4]. In particular, the continuous fraction result that we skipped is [1, Theorem A4.16]. Normal operators: [1, Ch. 2.1.6]. Operator $U_a$, its eigenvalues and eigenvectors: [3, Ch. 7.3.3]. Eigenvalue estimation problem. Controlled operators $c-U$ (sometimes called $\Lambda^1(U)$) and $c-U^x$: [3, Ch 7.2].
Fourth week: Shor's algorithm cntd. Quantum Fourier Transform $QFT_m$ over cyclic groups and its inverse [3, Ch 7.1]. For an efficient realization of $QFT_{2^h}$ see [3, Ch. 7.3]. Discrete Logarithm: [3, Ch. 7.4]. For the Hidden Subgroup Problem in Abelian groups, I recommend [2, Ch. 13.8]; as I mentioned, [8] still seems to be a good survey for the non-Abelian case (the application to Graph Isomorphism seems to be a part of folklore). Quantum Complexity Theory. Lower bounds for quantum search via the hybrid method; our exposition more or less follows [3, Ch. 9.3].
Fifth week: Hybrid method cntd. Mega-theorem about polynomial equivalence of various complexity measures for total functions, along with references, can be found (in bits and pieces) in the survey [10], see in particular Theorems 10, 11, 2, 7, 17 and 18. The solution of the sensitivity conjecture: [11]. See [12] and the references therein for (apparently) the most recent refinements of the mega-theorem, based on [11]. Approximate degree of AND-OR tree (without proof): [13, 14]. The standard textbook in classical communication complexity is [15] (see also [4], [6] or check out my survey [16] for an exposition at a highly introductory level).
Sixth week: Deterministic communication complexity [15, Ch. 1.4] or [16, Sct. 2]. The rank lower bound [15, Ch. 1.4]. Probabilistic communication complexity [15, Ch. 3]. Rabin's protocol for the equality function [15, Example 3.5]. The quantum communication complexity was introduced in [17]. The relation between quantum query and communication complexities for block-composed functions was observed in [18]. The decomposition theorem for quantum communication protocols also appeared in [17], and it was further refined in [19,20]. Discrepancy method. The lower bound in terms of the spectral norm of the communication matrix is from [19].
Seventh week: Generalized discrepancy method. For the trace norm (as well as many others) see [21]. Approximate trace norm was introduced in [19], and the same paper proved tight lower bounds for block-composed versions of symmetric predicates. A simpler proof (based on generalized discrepancy) was given in [22]. Our exposition of Quantum Probability follows [3, Ch. 3.5] or [2, Ch. 10]. Density matrices. Concrete examples of physically realizable operators (aka superoperators): unitary action, probabilistic quantum circuits, one qubit noise models (an excellent overview of those can be found in [1, Ch. 8.3]), tracing out, projective measurements, unitary embeddings. Three equivalent definitions. The axiomatic one is in [1, Ch. 8.2.4] (note that they consider a slightly more general version when the trace is allowed to decrease). Tracing-out + unitary embedding: [2, Problem 11.1]. Operator-sum representation: [1, Ch. 8.2.3.]; for another account see [2, Ch. 11.1]. Equivalence of the first and the third definition: [1, Theorem 8.1].
Eighth week: Superoperators do not increase trace distance: [1, Theorem 9.2]. No-cloning theorem: [3, Theorem 10.4.1]. Classical error-correction (concept). For the best transmission rate $R$ in terms of the relative error $\delta$, there are many bounds, both upper and lower. The most prominent ones still seem to be Gilbert-Varshamov bound and Hamming bound. Projective and syndrom measurements [3, Ch. 3.4]. Three qubit bit/phase flip codes are in [1, Ch. 10.1], and the Shor code is in [1, Ch. 10.2]. Criterium of quantum recovery (single error channel): [1, Theorem 10.1]. Unitary equivalence for mixed states: [1, Theorem 2.6]. Unitary equivalence for operator-sum representations: [1, Theorem 8.2].
Ninth week: Criterium of quantum recovery (single error channel), proof. Discretization of the errors (correctable linear spaces for operator elements): [1, Sct. 10.3.1]. Basics of the theory of stabilizer codes: [1, Ch. 10.5].